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Workflow Management Systems: Our Software Solutions Using Nextflow and Snakemake

Case Studies

Streamlined NGS Analysis Pipeline Integration for Precision Medicine and Canine Diagnostics

  • Company A: Partner since 2017. Required development and integration of Nextflow pipelines for NGS secondary analysis.
  • Company B: Needed their NGS analysis pipelines ported to Snakemake.
  • Company A collaborated with the development team to transition their secondary NGS pipeline to Nextflow and migrate it to a serverless platform within three months.
  • Company B provided an end-to-end pipeline for secondary NGS analysis and variant annotation, converting to Snakemake and porting to Google Cloud Life Sciences following the launch of a liquid biopsy test.

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